List of files for the 4 large scale examples of the paper "Determining the distance to monotonicity of a biological network: a graph-theoretical approach"

The folder contains the 4 original (directed) adjacency matrices, the 4 symmetrized adjacency matrices, and 4 matrices (spin_*) containing a certain number of optimal partial orders (each column is a vector \sigma such that the "gauge transformed" adjacency matrix diag(\sigma)*A_symm*diag(\sigma) has minimal number of negative edges.

4 directed adjacency matrices:
- ecoli_directed.txt  
- EGFR_directed.txt  
- macrophage_directed.txt  
- yeast_directed.txt

4 symmetric adjacency matrices
- ecoli_symm.txt   
- EGFR_symm.txt    
- macrophage_symm.txt   
- yeast_symm.txt

4 matrices of partial orders
- spin_ecoli.txt  
- spin_macro.txt
- spin_EGFR.txt 
- spin_yeast.txt